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| SMART_POINTER_SUPPORT (Rt_study) |
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| Rt_study () |
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| ~Rt_study () |
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void | load (const char *input_path, Plm_file_format file_type=PLM_FILE_FMT_UNKNOWN) |
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void | load (const std::string &input_path, Plm_file_format file_type=PLM_FILE_FMT_UNKNOWN) |
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void | load_dicom_dir (const char *dicom_dir) |
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void | load_dicom (const char *dicom_dir) |
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void | load_dicom_dose (const char *dicom_path) |
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void | load_dicom_rtss (const char *dicom_path) |
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void | load_dicom_rtplan (const char *dicom_path) |
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void | load_image (const char *fn) |
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void | load_image (const std::string &fn) |
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void | load_xio (const char *xio_dir) |
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void | load_rt_study_dir (const char *rt_study_dir) |
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void | load_rt_study_dir (const std::string &rt_study_dir) |
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void | load_ss_img (const char *ss_img, const char *ss_list) |
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void | load_dose_img (const char *dose_img) |
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void | load_dose_xio (const char *dose_xio) |
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void | load_dose_astroid (const char *dose_astroid) |
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void | load_dose_mc (const char *dose_mc) |
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void | load_rdd (const char *image_directory) |
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void | load_dcmtk (const char *dicom_dir) |
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void | load_gdcm (const char *dicom_dir) |
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void | load_cxt (const char *input_fn) |
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void | load_prefix (const char *input_fn) |
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void | load_prefix (const std::string &input_fn) |
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void | save (const std::string &output_dir) |
| Save as directory of nrrd files.
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void | save_dicom (const std::string &output_dir, bool filenames_with_uid=true) |
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void | save_dicom (const char *output_dir, bool filenames_with_uid=true) |
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void | save_dicom_dose (const char *output_dir) |
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void | save_image (const std::string &fname) |
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void | save_image (const char *fname) |
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void | save_image (const char *fname, Plm_image_type image_type) |
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void | save_dose (const std::string &fname) |
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void | save_dose (const char *fname) |
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void | save_dose (const char *fname, Plm_image_type image_type) |
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void | save_prefix (const std::string &output_prefix, const std::string &extension="mha") |
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const Rt_study_metadata::Pointer & | get_rt_study_metadata () const |
| Get the Rt_study_metadata.
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Rt_study_metadata::Pointer & | get_rt_study_metadata () |
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void | set_study_metadata (const std::vector< std::string > &metadata) |
| Set metadata items into study_metadata portion of Rt_study_metadata.
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Metadata::Pointer & | get_study_metadata () |
| Get the study_metadata portion of Rt_study_metadata.
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void | set_image_metadata (const std::vector< std::string > &metadata) |
| Set metadata items into image portion of Rt_study_metadata.
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Metadata::Pointer & | get_image_metadata () |
| Get the image portion of Rt_study_metadata.
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void | set_dose_metadata (const std::vector< std::string > &metadata) |
| Set metadata items into dose portion of Rt_study_metadata.
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Metadata::Pointer & | get_dose_metadata () |
| Get the dose portion of Rt_study_metadata.
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void | set_rtstruct_metadata (const std::vector< std::string > &metadata) |
| Set metadata items into rtstruct portion of Rt_study_metadata.
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Metadata::Pointer & | get_rtstruct_metadata () |
| Get the rtstruct portion of Rt_study_metadata.
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void | generate_new_study_uids () |
| Create new StudyInstanceUID and FrameOfReferenceUID for the study.
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void | force_ct_series_uid (const std::string &series_uid) |
| Force the CT series UID to a certain value when saving.
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bool | have_image () |
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void | set_image (ShortImageType::Pointer &itk_image) |
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void | set_image (FloatImageType::Pointer &itk_image) |
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void | set_image (Plm_image *pli) |
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void | set_image (const Plm_image::Pointer &pli) |
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Plm_image::Pointer & | get_image () |
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bool | have_dose () |
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void | set_dose (Plm_image *pli) |
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void | set_dose (FloatImageType::Pointer itk_dose) |
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void | set_dose (Volume *vol) |
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void | set_dose (const Plm_image::Pointer &pli) |
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Plm_image::Pointer | get_dose () |
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bool | have_segmentation () |
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Segmentation::Pointer | get_segmentation () |
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void | set_segmentation (Segmentation::Pointer seg) |
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void | add_structure (const UCharImageType::Pointer &itk_image, const char *structure_name=0, const char *structure_color=0) |
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bool | have_plan () |
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Rtplan::Pointer & | get_plan () |
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const std::string & | get_xio_dose_filename () const |
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Xio_ct_transform * | get_xio_ct_transform () |
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Volume::Pointer | get_image_volume_short () |
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Volume::Pointer | get_image_volume_float () |
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bool | has_dose () |
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Volume::Pointer | get_dose_volume_float () |
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void | resample (float spacing[3]) |
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The Rt_study class encapsulates the concept of a radiotherapy planning data set, including image, structure set, and dose.