38 void load (
const char* input_path,
40 void load (
const std::string& input_path,
52 void load_ss_img (
const char *ss_img,
const char *ss_list);
57 void load_rdd (
const char *image_directory);
61 void load_cxt (
const char *input_fn);
66 void save (
const std::string& output_dir);
68 void save_dicom (
const std::string& output_dir,
69 bool filenames_with_uid =
true);
71 bool filenames_with_uid =
true);
78 void save_dose (
const std::string& fname);
83 const std::string& extension =
"mha");
111 void set_image (ShortImageType::Pointer& itk_image);
112 void set_image (FloatImageType::Pointer& itk_image);
119 void set_dose (FloatImageType::Pointer itk_dose);
128 const UCharImageType::Pointer& itk_image,
129 const char *structure_name = 0,
130 const char *structure_color = 0);
147 void save_dcmtk (
const char *dicom_dir,
bool filenames_with_uid);
The Plm_image class represents a three-dimensional volume. The volume is an abstraction that can co...
Definition plm_image.h:27
std::shared_ptr< Self > Pointer
Definition plm_image.h:29
Definition rt_study_p.h:14
void set_dose_metadata(const std::vector< std::string > &metadata)
Set metadata items into dose portion of Rt_study_metadata.
Definition rt_study.cxx:578
Xio_ct_transform * get_xio_ct_transform()
Definition rt_study.cxx:735
void save_dcmtk_dose(const char *dicom_dir)
Definition rtds_dcmtk.cxx:62
Segmentation::Pointer get_segmentation()
Definition rt_study.cxx:699
void save_dicom_dose(const char *output_dir)
Definition rt_study.cxx:449
void save_image(const std::string &fname)
Definition rt_study.cxx:481
bool has_dose()
Definition rt_study.cxx:765
void set_image_metadata(const std::vector< std::string > &metadata)
Set metadata items into image portion of Rt_study_metadata.
Definition rt_study.cxx:565
Volume::Pointer get_image_volume_short()
Definition rt_study.cxx:747
Metadata::Pointer & get_dose_metadata()
Get the dose portion of Rt_study_metadata.
Definition rt_study.cxx:585
Metadata::Pointer & get_rtstruct_metadata()
Get the rtstruct portion of Rt_study_metadata.
Definition rt_study.cxx:598
void set_image(ShortImageType::Pointer &itk_image)
Definition rt_study.cxx:629
const std::string & get_xio_dose_filename() const
Definition rt_study.cxx:741
bool have_image()
Definition rt_study.cxx:616
Plm_image::Pointer & get_image()
Definition rt_study.cxx:623
void save_dcmtk(const char *dicom_dir, bool filenames_with_uid)
Definition rtds_dcmtk.cxx:36
void load_rdd(const char *image_directory)
Definition rt_study.cxx:331
void load_gdcm(const char *dicom_dir)
void set_dose(Plm_image *pli)
Definition rt_study.cxx:659
void save(const std::string &output_dir)
Save as directory of nrrd files.
Definition rt_study.cxx:463
void load_dcmtk(const char *dicom_dir)
Definition rtds_dcmtk.cxx:17
void resample(float spacing[3])
Definition rt_study.cxx:781
void save_prefix(const std::string &output_prefix, const std::string &extension="mha")
Definition rt_study.cxx:529
void load_ss_img(const char *ss_img, const char *ss_list)
Definition rt_study.cxx:313
void load_dose_mc(const char *dose_mc)
Definition rt_study.cxx:389
void load_cxt(const char *input_fn)
Definition rt_study.cxx:402
void load_xio(const char *xio_dir)
Definition rt_study.cxx:179
void load_image(const char *fn)
Definition rt_study.cxx:103
Rt_study_private * d_ptr
Definition rt_study.h:32
void save_dose(const std::string &fname)
Definition rt_study.cxx:505
void load_dicom_dir(const char *dicom_dir)
Definition rt_study.cxx:115
void convert_ss_img_to_cxt()
Rt_study()
Definition rt_study.cxx:32
Metadata::Pointer & get_study_metadata()
Get the study_metadata portion of Rt_study_metadata.
Definition rt_study.cxx:559
void load_dose_img(const char *dose_img)
Definition rt_study.cxx:320
void load_dicom_rtss(const char *dicom_path)
Definition rt_study.cxx:147
void load_dicom_dose(const char *dicom_path)
Definition rt_study.cxx:169
const Rt_study_metadata::Pointer & get_rt_study_metadata() const
Get the Rt_study_metadata.
Definition rt_study.cxx:537
void force_ct_series_uid(const std::string &series_uid)
Force the CT series UID to a certain value when saving.
Definition rt_study.cxx:610
void load_dose_xio(const char *dose_xio)
Definition rt_study.cxx:359
void set_segmentation(Segmentation::Pointer seg)
Definition rt_study.cxx:705
Metadata::Pointer & get_image_metadata()
Get the image portion of Rt_study_metadata.
Definition rt_study.cxx:572
void set_rtstruct_metadata(const std::vector< std::string > &metadata)
Set metadata items into rtstruct portion of Rt_study_metadata.
Definition rt_study.cxx:591
void generate_new_study_uids()
Create new StudyInstanceUID and FrameOfReferenceUID for the study.
Definition rt_study.cxx:604
void load_rt_study_dir(const char *rt_study_dir)
Definition rt_study.cxx:298
void load_dicom_rtplan(const char *dicom_path)
Definition rt_study.cxx:158
Rtplan::Pointer & get_plan()
Definition rt_study.cxx:729
void set_study_metadata(const std::vector< std::string > &metadata)
Set metadata items into study_metadata portion of Rt_study_metadata.
Definition rt_study.cxx:549
Volume::Pointer get_dose_volume_float()
Definition rt_study.cxx:771
void add_structure(const UCharImageType::Pointer &itk_image, const char *structure_name=0, const char *structure_color=0)
Definition rt_study.cxx:711
bool have_plan()
Definition rt_study.cxx:723
Plm_image::Pointer get_dose()
Definition rt_study.cxx:687
void save_dicom(const std::string &output_dir, bool filenames_with_uid=true)
Definition rt_study.cxx:443
bool have_segmentation()
Definition rt_study.cxx:693
void load_prefix(const char *input_fn)
Definition rt_study.cxx:409
bool have_dose()
Definition rt_study.cxx:653
void load(const char *input_path, Plm_file_format file_type=PLM_FILE_FMT_UNKNOWN)
Definition rt_study.cxx:44
Volume::Pointer get_image_volume_float()
Definition rt_study.cxx:756
void load_dicom(const char *dicom_dir)
Definition rt_study.cxx:133
void load_dose_astroid(const char *dose_astroid)
Definition rt_study.cxx:374
std::shared_ptr< Self > Pointer
Definition rtplan.h:22
std::shared_ptr< Self > Pointer
Definition segmentation.h:25
The Volume class represents a three-dimensional volume on a uniform grid. The volume can be located a...
Definition volume.h:38
Plm_image_type
Definition plm_image_type.h:11
#define PLMBASE_API
Definition plmbase_config.h:19
#define SMART_POINTER_SUPPORT(T)
Definition smart_pointer.h:19