xform.cxx File Reference

#include "plmbase_config.h"
#include <stdlib.h>
#include <string.h>
#include "itkArray.h"
#include "itkResampleImageFilter.h"
#include "itkBSplineResampleImageFunction.h"
#include "itkTransformFileWriter.h"
#include "itkTransformFileReader.h"
#include "bspline_interpolate.h"
#include "bspline_xform.h"
#include "bspline_xform_legacy.h"
#include "file_util.h"
#include "itk_directions.h"
#include "itk_image_create.h"
#include "itk_image_load.h"
#include "itk_image_save.h"
#include "itk_resample.h"
#include "logfile.h"
#include "mha_io.h"
#include "plm_image_header.h"
#include "plm_math.h"
#include "print_and_exit.h"
#include "string_util.h"
#include "volume.h"
#include "volume_header.h"
#include "volume_resample.h"
#include "xform.h"
#include "xform_legacy.h"

Functions
static void	itk_bsp_set_grid_img (Xform *xf, const Plm_image_header *pih, const float *grid_spac)
static void	load_gpuit_bsp (Xform *xf, const char *fn)
static void	itk_xform_load (Xform *xf, const char *fn)
void	xform_load (Xform *xf, const char *fn)
void	xform_load (Xform *xf, const std::string &fn)
Xform::Pointer	xform_load (const char *fn)
Xform::Pointer	xform_load (const std::string &fn)
template<class T >
static void	itk_xform_save (const T transform, const char *filename)
void	xform_save (Xform *xf, const char *fn)
void	xform_save (Xform *xf, const std::string &fn)
static void	init_versor_default (Xform *xf_out)
static void	init_quaternion_default (Xform *xf_out)
static void	init_affine_default (Xform *xf_out)
static void	init_similarity_default (Xform *xf_out)
void	xform_itk_bsp_init_default (Xform *xf)
static void	xform_trn_to_vrs (Xform *xf_out, const Xform *xf_in)
static void	xform_trn_to_aff (Xform *xf_out, const Xform *xf_in)
void	xform_trn_to_sim (Xform *xf_out, const Xform *xf_in)
static void	xform_vrs_to_quat (Xform *xf_out, const Xform *xf_in)
static void	xform_vrs_to_aff (Xform *xf_out, const Xform *xf_in)
static void	xform_vrs_to_sim (Xform *xf_out, const Xform *xf_in)
void	xform_sim_to_aff (Xform *xf_out, const Xform *xf_in)
static void	bsp_grid_from_img_grid (BsplineTransformType::OriginType &bsp_origin, BsplineTransformType::SpacingType &bsp_spacing, BsplineTransformType::RegionType &bsp_region, BsplineTransformType::DirectionType &bsp_direction, const Plm_image_header *pih, const float *grid_spac)
static void	xform_trn_to_itk_bsp_bulk (Xform *xf_out, const Xform *xf_in, const Plm_image_header *pih, const float *grid_spac)
static void	xform_vrs_to_itk_bsp_bulk (Xform *xf_out, const Xform *xf_in, const Plm_image_header *pih, const float *grid_spac)
static void	xform_quat_to_itk_bsp_bulk (Xform *xf_out, const Xform *xf_in, const Plm_image_header *pih, const float *grid_spac)
static void	xform_aff_to_itk_bsp_bulk (Xform *xf_out, const Xform *xf_in, const Plm_image_header *pih, const float *grid_spac)
static void	xform_any_to_itk_bsp_nobulk (Xform *xf_out, Xform *xf_in, const Bspline_header *bh)
static void	xform_any_to_itk_bsp_nobulk (Xform *xf_out, Xform *xf_in, const Plm_image_header *pih, const float *grid_spac)
static void	itk_bsp_extend_to_region (Xform *xf, const Plm_image_header *pih, const RegionType *roi)
static void	xform_itk_bsp_to_itk_bsp (Xform *xf_out, const Xform *xf_in, const Plm_image_header *pih, const float *grid_spac)
static void	gpuit_bsp_grid_to_itk_bsp_grid (BsplineTransformType::OriginType &bsp_origin, BsplineTransformType::SpacingType &bsp_spacing, BsplineTransformType::RegionType &bsp_region, BsplineTransformType::DirectionType &bsp_direction, Bspline_xform *bxf)
static void	gpuit_bsp_to_itk_bsp_raw (Xform *xf_out, const Xform *xf_in, const Plm_image_header *pih)
static void	xform_gpuit_bsp_to_itk_bsp (Xform *xf_out, const Xform *xf_in, const Plm_image_header *pih, const float *grid_spac)
static DeformationFieldType::Pointer	xform_itk_any_to_itk_vf (itk::Transform< double, 3, 3 > *xf, const Plm_image_header *pih)
static DeformationFieldType::Pointer	xform_itk_bsp_to_itk_vf (Xform *xf_in, const Plm_image_header *pih)
static DeformationFieldType::Pointer	xform_itk_vf_to_itk_vf (const DeformationFieldType::Pointer &vf, const Plm_image_header *pih)
static DeformationFieldType::Pointer	xform_gpuit_bsp_to_itk_vf (Xform *xf_in, const Plm_image_header *pih)
DeformationFieldType::Pointer	xform_gpuit_vf_to_itk_vf (Volume *vf, const Plm_image_header *pih)
static Bspline_xform *	create_gpuit_bxf (Plm_image_header *pih, const float *grid_spac)
void	xform_any_to_gpuit_bsp (Xform *xf_out, Xform *xf_in, Plm_image_header *pih, const float *grid_spac)
void	xform_gpuit_bsp_to_gpuit_bsp (Xform *xf_out, Xform *xf_in, Plm_image_header *pih, const float *grid_spac)
void	xform_gpuit_vf_to_gpuit_bsp (Xform *xf_out, Xform *xf_in, Plm_image_header *pih, const float *grid_spac)
static Volume::Pointer	xform_itk_any_to_gpuit_vf (itk::Transform< double, 3, 3 > *xf, const Plm_image_header *pih)
static Volume::Pointer	xform_gpuit_vf_to_gpuit_vf (const Volume::Pointer &vf_in, const Plm_image_header *pih)
static Volume::Pointer	xform_gpuit_bsp_to_gpuit_vf (const Xform *xf_in, const Plm_image_header *pih)
Volume::Pointer	xform_itk_vf_to_gpuit_vf (DeformationFieldType::Pointer itk_vf, const Plm_image_header *pih)
void	xform_to_trn (Xform *xf_out, const Xform *xf_in, Plm_image_header *pih)
void	xform_to_vrs (Xform *xf_out, const Xform *xf_in, Plm_image_header *pih)
void	xform_to_quat (Xform *xf_out, const Xform *xf_in, Plm_image_header *pih)
void	xform_to_aff (Xform *xf_out, const Xform *xf_in, Plm_image_header *pih)
Xform::Pointer	xform_to_aff (const Xform::Pointer &xf_in)
void	xform_to_similarity (Xform *xf_out, const Xform *xf_in, Plm_image_header *pih)
void	xform_to_itk_bsp (Xform *xf_out, const Xform *xf_in, Plm_image_header *pih, const float *grid_spac)
Xform::Pointer	xform_to_itk_bsp (const Xform::Pointer &xf_in, Plm_image_header *pih, const float *grid_spac)
void	xform_to_itk_bsp_nobulk (Xform *xf_out, Xform *xf_in, Plm_image_header *pih, const float *grid_spac)
Xform::Pointer	xform_to_itk_bsp_nobulk (const Xform::Pointer &xf_in, Plm_image_header *pih, const float *grid_spac)
void	xform_to_itk_vf (Xform *xf_out, Xform *xf_in, const Plm_image_header *pih)
void	xform_to_itk_vf (Xform *xf_out, Xform *xf_in, FloatImageType::Pointer image)
Xform::Pointer	xform_to_itk_vf (const Xform::Pointer &xf_in, Plm_image_header *pih)
void	xform_to_gpuit_bsp (Xform *xf_out, Xform *xf_in, Plm_image_header *pih, const float *grid_spac)
Xform::Pointer	xform_to_gpuit_bsp (const Xform::Pointer &xf_in, Plm_image_header *pih, float *grid_spac)
void	xform_to_gpuit_vf (Xform *xf_out, const Xform *xf_in, const Plm_image_header *pih)
Xform::Pointer	xform_to_gpuit_vf (const Xform::Pointer &xf_in, const Plm_image_header *pih)

Function Documentation

bsp_grid_from_img_grid()

static void bsp_grid_from_img_grid ( BsplineTransformType::OriginType &  bsp_origin, BsplineTransformType::SpacingType &  bsp_spacing, BsplineTransformType::RegionType &  bsp_region, BsplineTransformType::DirectionType &  bsp_direction, const Plm_image_header *  pih, const float *  grid_spac  )

static

create_gpuit_bxf()

static Bspline_xform * create_gpuit_bxf ( Plm_image_header *  pih, const float *  grid_spac  )

static

gpuit_bsp_grid_to_itk_bsp_grid()

static void gpuit_bsp_grid_to_itk_bsp_grid ( BsplineTransformType::OriginType &  bsp_origin, BsplineTransformType::SpacingType &  bsp_spacing, BsplineTransformType::RegionType &  bsp_region, BsplineTransformType::DirectionType &  bsp_direction, Bspline_xform *  bxf  )

static

gpuit_bsp_to_itk_bsp_raw()

static void gpuit_bsp_to_itk_bsp_raw ( Xform *  xf_out, const Xform *  xf_in, const Plm_image_header *  pih  )

static

init_affine_default()

static void init_affine_default ( Xform *  xf_out )

static

init_quaternion_default()

static void init_quaternion_default ( Xform *  xf_out )

static

init_similarity_default()

static void init_similarity_default ( Xform *  xf_out )

static

init_versor_default()

static void init_versor_default ( Xform *  xf_out )

static

itk_bsp_extend_to_region()

static void itk_bsp_extend_to_region ( Xform *  xf, const Plm_image_header *  pih, const RegionType *  roi  )

static

itk_bsp_set_grid_img()

static void itk_bsp_set_grid_img ( Xform *  xf, const Plm_image_header *  pih, const float *  grid_spac  )

static

itk_xform_load()

static void itk_xform_load ( Xform *  xf, const char *  fn  )

static

itk_xform_save()

template<class T >

static void itk_xform_save ( const T  transform, const char *  filename  )

static

load_gpuit_bsp()

static void load_gpuit_bsp ( Xform *  xf, const char *  fn  )

static

xform_aff_to_itk_bsp_bulk()

static void xform_aff_to_itk_bsp_bulk ( Xform *  xf_out, const Xform *  xf_in, const Plm_image_header *  pih, const float *  grid_spac  )

static

xform_any_to_gpuit_bsp()

void xform_any_to_gpuit_bsp	(	Xform *	xf_out,
		Xform *	xf_in,
		Plm_image_header *	pih,
		const float *	grid_spac
	)

xform_any_to_itk_bsp_nobulk() [1/2]

static void xform_any_to_itk_bsp_nobulk ( Xform *  xf_out, Xform *  xf_in, const Bspline_header *  bh  )

static

xform_any_to_itk_bsp_nobulk() [2/2]

static void xform_any_to_itk_bsp_nobulk ( Xform *  xf_out, Xform *  xf_in, const Plm_image_header *  pih, const float *  grid_spac  )

static

xform_gpuit_bsp_to_gpuit_bsp()

void xform_gpuit_bsp_to_gpuit_bsp	(	Xform *	xf_out,
		Xform *	xf_in,
		Plm_image_header *	pih,
		const float *	grid_spac
	)

xform_gpuit_bsp_to_gpuit_vf()

static Volume::Pointer xform_gpuit_bsp_to_gpuit_vf ( const Xform *  xf_in, const Plm_image_header *  pih  )

static

xform_gpuit_bsp_to_itk_bsp()

static void xform_gpuit_bsp_to_itk_bsp ( Xform *  xf_out, const Xform *  xf_in, const Plm_image_header *  pih, const float *  grid_spac  )

static

xform_gpuit_bsp_to_itk_vf()

static DeformationFieldType::Pointer xform_gpuit_bsp_to_itk_vf ( Xform *  xf_in, const Plm_image_header *  pih  )

static

xform_gpuit_vf_to_gpuit_bsp()

void xform_gpuit_vf_to_gpuit_bsp	(	Xform *	xf_out,
		Xform *	xf_in,
		Plm_image_header *	pih,
		const float *	grid_spac
	)

xform_gpuit_vf_to_gpuit_vf()

static Volume::Pointer xform_gpuit_vf_to_gpuit_vf ( const Volume::Pointer &  vf_in, const Plm_image_header *  pih  )

static

xform_gpuit_vf_to_itk_vf()

DeformationFieldType::Pointer xform_gpuit_vf_to_itk_vf	(	Volume *	vf,
		const Plm_image_header *	pih
	)

xform_itk_any_to_gpuit_vf()

static Volume::Pointer xform_itk_any_to_gpuit_vf ( itk::Transform< double, 3, 3 > *  xf, const Plm_image_header *  pih  )

static

xform_itk_any_to_itk_vf()

static DeformationFieldType::Pointer xform_itk_any_to_itk_vf ( itk::Transform< double, 3, 3 > *  xf, const Plm_image_header *  pih  )

static

xform_itk_bsp_init_default()

void xform_itk_bsp_init_default

(

Xform *

xf

)

xform_itk_bsp_to_itk_bsp()

static void xform_itk_bsp_to_itk_bsp ( Xform *  xf_out, const Xform *  xf_in, const Plm_image_header *  pih, const float *  grid_spac  )

static

xform_itk_bsp_to_itk_vf()

static DeformationFieldType::Pointer xform_itk_bsp_to_itk_vf ( Xform *  xf_in, const Plm_image_header *  pih  )

static

xform_itk_vf_to_gpuit_vf()

Volume::Pointer xform_itk_vf_to_gpuit_vf	(	DeformationFieldType::Pointer	itk_vf,
		const Plm_image_header *	pih
	)

xform_itk_vf_to_itk_vf()

static DeformationFieldType::Pointer xform_itk_vf_to_itk_vf ( const DeformationFieldType::Pointer &  vf, const Plm_image_header *  pih  )

static

xform_load() [1/4]

Xform::Pointer xform_load

(

const char *

fn

)

xform_load() [2/4]

Xform::Pointer xform_load

(

const std::string &

fn

)

xform_load() [3/4]

void xform_load	(	Xform *	xf,
		const char *	fn
	)

xform_load() [4/4]

void xform_load	(	Xform *	xf,
		const std::string &	fn
	)

xform_quat_to_itk_bsp_bulk()

static void xform_quat_to_itk_bsp_bulk ( Xform *  xf_out, const Xform *  xf_in, const Plm_image_header *  pih, const float *  grid_spac  )

static

xform_save() [1/2]

void xform_save	(	Xform *	xf,
		const char *	fn
	)

xform_save() [2/2]

void xform_save	(	Xform *	xf,
		const std::string &	fn
	)

xform_sim_to_aff()

void xform_sim_to_aff	(	Xform *	xf_out,
		const Xform *	xf_in
	)

xform_to_aff() [1/2]

Xform::Pointer xform_to_aff

(

const Xform::Pointer &

xf_in

)

xform_to_aff() [2/2]

void xform_to_aff	(	Xform *	xf_out,
		const Xform *	xf_in,
		Plm_image_header *	pih
	)

xform_to_gpuit_bsp() [1/2]

Xform::Pointer xform_to_gpuit_bsp	(	const Xform::Pointer &	xf_in,
		Plm_image_header *	pih,
		float *	grid_spac
	)

xform_to_gpuit_bsp() [2/2]

void xform_to_gpuit_bsp	(	Xform *	xf_out,
		Xform *	xf_in,
		Plm_image_header *	pih,
		const float *	grid_spac
	)

xform_to_gpuit_vf() [1/2]

Xform::Pointer xform_to_gpuit_vf	(	const Xform::Pointer &	xf_in,
		const Plm_image_header *	pih
	)

xform_to_gpuit_vf() [2/2]

void xform_to_gpuit_vf	(	Xform *	xf_out,
		const Xform *	xf_in,
		const Plm_image_header *	pih
	)

xform_to_itk_bsp() [1/2]

Xform::Pointer xform_to_itk_bsp	(	const Xform::Pointer &	xf_in,
		Plm_image_header *	pih,
		const float *	grid_spac
	)

xform_to_itk_bsp() [2/2]

void xform_to_itk_bsp	(	Xform *	xf_out,
		const Xform *	xf_in,
		Plm_image_header *	pih,
		const float *	grid_spac
	)

xform_to_itk_bsp_nobulk() [1/2]

Xform::Pointer xform_to_itk_bsp_nobulk	(	const Xform::Pointer &	xf_in,
		Plm_image_header *	pih,
		const float *	grid_spac
	)

xform_to_itk_bsp_nobulk() [2/2]

void xform_to_itk_bsp_nobulk	(	Xform *	xf_out,
		Xform *	xf_in,
		Plm_image_header *	pih,
		const float *	grid_spac
	)

xform_to_itk_vf() [1/3]

Xform::Pointer xform_to_itk_vf	(	const Xform::Pointer &	xf_in,
		Plm_image_header *	pih
	)

xform_to_itk_vf() [2/3]

void xform_to_itk_vf	(	Xform *	xf_out,
		Xform *	xf_in,
		const Plm_image_header *	pih
	)

xform_to_itk_vf() [3/3]

void xform_to_itk_vf	(	Xform *	xf_out,
		Xform *	xf_in,
		FloatImageType::Pointer	image
	)

xform_to_quat()

void xform_to_quat	(	Xform *	xf_out,
		const Xform *	xf_in,
		Plm_image_header *	pih
	)

xform_to_similarity()

void xform_to_similarity	(	Xform *	xf_out,
		const Xform *	xf_in,
		Plm_image_header *	pih
	)

xform_to_trn()

void xform_to_trn	(	Xform *	xf_out,
		const Xform *	xf_in,
		Plm_image_header *	pih
	)

xform_to_vrs()

void xform_to_vrs	(	Xform *	xf_out,
		const Xform *	xf_in,
		Plm_image_header *	pih
	)

xform_trn_to_aff()

static void xform_trn_to_aff ( Xform *  xf_out, const Xform *  xf_in  )

static

xform_trn_to_itk_bsp_bulk()

static void xform_trn_to_itk_bsp_bulk ( Xform *  xf_out, const Xform *  xf_in, const Plm_image_header *  pih, const float *  grid_spac  )

static

xform_trn_to_sim()

void xform_trn_to_sim	(	Xform *	xf_out,
		const Xform *	xf_in
	)

xform_trn_to_vrs()

static void xform_trn_to_vrs ( Xform *  xf_out, const Xform *  xf_in  )

static

xform_vrs_to_aff()

static void xform_vrs_to_aff ( Xform *  xf_out, const Xform *  xf_in  )

static

xform_vrs_to_itk_bsp_bulk()

static void xform_vrs_to_itk_bsp_bulk ( Xform *  xf_out, const Xform *  xf_in, const Plm_image_header *  pih, const float *  grid_spac  )

static

xform_vrs_to_quat()

static void xform_vrs_to_quat ( Xform *  xf_out, const Xform *  xf_in  )

static

xform_vrs_to_sim()

static void xform_vrs_to_sim ( Xform *  xf_out, const Xform *  xf_in  )

static