rtog_io.cxx File Reference

#include "plm_config.h"
#include <stdio.h>
#include <stdlib.h>
#include <ctype.h>
#include <string.h>
#include <math.h>
#include "exchkeys.h"
#include "file_util.h"

Macros
#define	BUFLEN   2048

Typedefs
typedef struct program_parms	Program_Parms
typedef struct ct_header	CT_Header
typedef struct dose_header	DOSE_Header
typedef struct polyline	Cxt_polyline
typedef struct polyline_slice	Cxt_polyline_Slice
typedef struct structure	STRUCTURE
typedef struct structure_list	STRUCTURE_List
typedef struct rtog_header	RTOG_Header
typedef struct rtog_line	RTOG_Line

Functions
void	print_usage (void)
void	gs_strncpy (char *dst, char *src, int n)
int	get_rtog_line (FILE *fp, char *key, char *val)
int	parse_rtog_string (char **list, int list_size, char *str)
int	parse_rtog_key (char *key)
int	parse_rtog_value (char *value)
int	parse_rtog_line (RTOG_Line *rtog_line, char *key, char *val)
int	set_ct_ival (RTOG_Header *rtog_header, RTOG_Line *rtog_line, int imno, int *tgt, char *tgt_comment)
int	set_ct_fval (RTOG_Header *rtog_header, RTOG_Line *rtog_line, int imno, float *tgt, char *tgt_comment)
void	load_rtog_header (RTOG_Header *rtog_header, Program_Parms *parms)
void	load_ct (RTOG_Header *rtog_header, Program_Parms *parms)
void	make_output_dir (Program_Parms *parms)
void	correct_ct (RTOG_Header *rtog_header)
void	write_ct (RTOG_Header *rtog_header, Program_Parms *parms)
void	free_ct (RTOG_Header *rtog_header)
void	load_dose (RTOG_Header *rtog_header, Program_Parms *parms)
void	correct_dose (RTOG_Header *rtog_header)
void	write_dose (RTOG_Header *rtog_header, Program_Parms *parms)
void	free_dose (RTOG_Header *rtog_header)
void	load_structure (STRUCTURE *structure, Program_Parms *parms)
void	load_skin (RTOG_Header *rtog_header, Program_Parms *parms)
void	render_slice (RTOG_Header *rtog_header, unsigned char *slice_img, unsigned char *acc_img, Cxt_polyline_Slice *ps)
void	render_skin (RTOG_Header *rtog_header, Program_Parms *parms)
void	correct_skin (RTOG_Header *rtog_header)
void	write_skin (RTOG_Header *rtog_header, Program_Parms *parms)
void	free_skin (RTOG_Header *rtog_header)
void	write_rtog_dose (Program_Parms *parms)

Variables
char	mha_header_pat []

Macro Definition Documentation

BUFLEN

#define BUFLEN   2048

Typedef Documentation

CT_Header

typedef struct ct_header CT_Header

Cxt_polyline

typedef struct polyline Cxt_polyline

Cxt_polyline_Slice

typedef struct polyline_slice Cxt_polyline_Slice

DOSE_Header

typedef struct dose_header DOSE_Header

Program_Parms

typedef struct program_parms Program_Parms

RTOG_Header

typedef struct rtog_header RTOG_Header

RTOG_Line

typedef struct rtog_line RTOG_Line

STRUCTURE

typedef struct structure STRUCTURE

STRUCTURE_List

typedef struct structure_list STRUCTURE_List

Function Documentation

correct_ct()

void correct_ct

(

RTOG_Header *

rtog_header

)

correct_dose()

void correct_dose

(

RTOG_Header *

rtog_header

)

correct_skin()

void correct_skin

(

RTOG_Header *

rtog_header

)

free_ct()

void free_ct

(

RTOG_Header *

rtog_header

)

free_dose()

void free_dose

(

RTOG_Header *

rtog_header

)

free_skin()

void free_skin

(

RTOG_Header *

rtog_header

)

get_rtog_line()

int get_rtog_line	(	FILE *	fp,
		char *	key,
		char *	val )

gs_strncpy()

void gs_strncpy	(	char *	dst,
		char *	src,
		int	n )

load_ct()

void load_ct	(	RTOG_Header *	rtog_header,
		Program_Parms *	parms )

load_dose()

void load_dose	(	RTOG_Header *	rtog_header,
		Program_Parms *	parms )

load_rtog_header()

void load_rtog_header	(	RTOG_Header *	rtog_header,
		Program_Parms *	parms )

load_skin()

void load_skin	(	RTOG_Header *	rtog_header,
		Program_Parms *	parms )

load_structure()

void load_structure	(	STRUCTURE *	structure,
		Program_Parms *	parms )

make_output_dir()

void make_output_dir

(

Program_Parms *

parms

)

parse_rtog_key()

int parse_rtog_key

(

char *

key

)

parse_rtog_line()

int parse_rtog_line	(	RTOG_Line *	rtog_line,
		char *	key,
		char *	val )

parse_rtog_string()

int parse_rtog_string	(	char **	list,
		int	list_size,
		char *	str )

parse_rtog_value()

int parse_rtog_value

(

char *

value

)

print_usage()

void print_usage

(

void

)

render_skin()

void render_skin	(	RTOG_Header *	rtog_header,
		Program_Parms *	parms )

render_slice()

void render_slice	(	RTOG_Header *	rtog_header,
		unsigned char *	slice_img,
		unsigned char *	acc_img,
		Cxt_polyline_Slice *	ps )

set_ct_fval()

int set_ct_fval	(	RTOG_Header *	rtog_header,
		RTOG_Line *	rtog_line,
		int	imno,
		float *	tgt,
		char *	tgt_comment )

set_ct_ival()

int set_ct_ival	(	RTOG_Header *	rtog_header,
		RTOG_Line *	rtog_line,
		int	imno,
		int *	tgt,
		char *	tgt_comment )

write_ct()

void write_ct	(	RTOG_Header *	rtog_header,
		Program_Parms *	parms )

write_dose()

void write_dose	(	RTOG_Header *	rtog_header,
		Program_Parms *	parms )

write_rtog_dose()

void write_rtog_dose

(

Program_Parms *

parms

)

write_skin()

void write_skin	(	RTOG_Header *	rtog_header,
		Program_Parms *	parms )

Variable Documentation

mha_header_pat

char mha_header_pat[]

Initial value:

= 
    "ObjectType = Image\n"
    "NDims = 3\n"
    "BinaryData = True\n"
    "BinaryDataByteOrderMSB = False\n"
    "Offset = %f %f %f\n"
    "ElementSpacing = %f %f %f\n"
    "DimSize = %d %d %d\n"
    "AnatomicalOrientation = RAI\n"
    "ElementType = %s\n"
    "ElementDataFile = LOCAL\n"