itk_local_intensity_correction.cxx File Reference

#include "plmutil_config.h"
#include <limits>
#include "itk_image.h"
#include "itk_image_header_compare.h"
#include "itk_resample.h"
#include "itkImageRegionIterator.h"
#include "itk_local_intensity_correction.h"
#include "itk_image_clone.h"
#include "itk_image_save.h"
#include "itkResampleImageFilter.h"
#include "itkTranslationTransform.h"
#include "itkNearestNeighborInterpolateImageFunction.h"
#include "itk_mask.h"
#include "itkMedianImageFilter.h"

Functions
UCharImageType::Pointer	GetFullMask (FloatImageType::Pointer img)
void	GetIntensityCorrectionField (FloatImageType::Pointer &source_image, FloatImageType::Pointer &reference_image, SizeType patch_size, UCharImageType::Pointer &source_mask, UCharImageType::Pointer &reference_mask, FloatImageType::Pointer &shift_field, FloatImageType::Pointer &scale_field)
FloatImageType::Pointer	BlendField (FloatImageType::Pointer field, FloatImageType::Pointer source, bool trilinear)
void	BlendIntensityCorrectionField (FloatImageType::Pointer &shift_field, FloatImageType::Pointer &scale_field, const FloatImageType::Pointer &source, const UCharImageType::Pointer &mask, bool trilinear)
void	ApplyIntensityCorrectionField (FloatImageType::Pointer &img, const FloatImageType::Pointer &shift, const FloatImageType::Pointer &scale)
FloatImageType::Pointer	ApplyMedianFilter (FloatImageType::Pointer img, SizeType mediansize)
FloatImageType::Pointer	itk_local_intensity_correction (FloatImageType::Pointer &source_image, FloatImageType::Pointer &reference_image, SizeType patch_size, bool blend, SizeType mediansize)
FloatImageType::Pointer	itk_local_intensity_correction (FloatImageType::Pointer &source_image, FloatImageType::Pointer &reference_image, SizeType patch_size, FloatImageType::Pointer &shift_field, FloatImageType::Pointer &scale_field, bool blend, SizeType mediansize)
FloatImageType::Pointer	itk_masked_local_intensity_correction (FloatImageType::Pointer &source_image, FloatImageType::Pointer &reference_image, SizeType patch_size, UCharImageType::Pointer &source_mask, UCharImageType::Pointer &reference_mask, FloatImageType::Pointer &shift_field, FloatImageType::Pointer &scale_field, bool blend, SizeType mediansize)

Function Documentation

ApplyIntensityCorrectionField()

void ApplyIntensityCorrectionField	(	FloatImageType::Pointer &	img,
		const FloatImageType::Pointer &	shift,
		const FloatImageType::Pointer &	scale )

ApplyMedianFilter()

FloatImageType::Pointer ApplyMedianFilter	(	FloatImageType::Pointer	img,
		SizeType	mediansize )

BlendField()

FloatImageType::Pointer BlendField	(	FloatImageType::Pointer	field,
		FloatImageType::Pointer	source,
		bool	trilinear )

BlendIntensityCorrectionField()

void BlendIntensityCorrectionField	(	FloatImageType::Pointer &	shift_field,
		FloatImageType::Pointer &	scale_field,
		const FloatImageType::Pointer &	source,
		const UCharImageType::Pointer &	mask,
		bool	trilinear )

GetFullMask()

UCharImageType::Pointer GetFullMask

(

FloatImageType::Pointer

img

)

GetIntensityCorrectionField()

void GetIntensityCorrectionField	(	FloatImageType::Pointer &	source_image,
		FloatImageType::Pointer &	reference_image,
		SizeType	patch_size,
		UCharImageType::Pointer &	source_mask,
		UCharImageType::Pointer &	reference_mask,
		FloatImageType::Pointer &	shift_field,
		FloatImageType::Pointer &	scale_field )

itk_local_intensity_correction() [1/2]

FloatImageType::Pointer itk_local_intensity_correction	(	FloatImageType::Pointer &	source_image,
		FloatImageType::Pointer &	reference_image,
		SizeType	patch_size,
		bool	blend,
		SizeType	mediansize )

itk_local_intensity_correction() [2/2]

FloatImageType::Pointer itk_local_intensity_correction	(	FloatImageType::Pointer &	source_image,
		FloatImageType::Pointer &	reference_image,
		SizeType	patch_size,
		FloatImageType::Pointer &	shift_field,
		FloatImageType::Pointer &	scale_field,
		bool	blend,
		SizeType	mediansize )

itk_masked_local_intensity_correction()

FloatImageType::Pointer itk_masked_local_intensity_correction	(	FloatImageType::Pointer &	source_image,
		FloatImageType::Pointer &	reference_image,
		SizeType	patch_size,
		UCharImageType::Pointer &	source_mask,
		UCharImageType::Pointer &	reference_mask,
		FloatImageType::Pointer &	shift_field,
		FloatImageType::Pointer &	scale_field,
		bool	blend,
		SizeType	mediansize )