#include "plmbase_config.h"
#include "itkTranslationTransform.h"
#include "itkVersorRigid3DTransform.h"
#include "itkQuaternionRigidTransform.h"
#include "itkAffineTransform.h"
#include "itkBSplineDeformableTransform.h"
#include "itkThinPlateSplineKernelTransform.h"
#include "itkSimilarity3DTransform.h"
#include "itk_image_type.h"
#include "smart_pointer.h"
#include "volume.h"

Classes
class	Xform
	The Xform class is an abstraction that encapsulates a simple transform, either native format (B-spline or vector field), or ITK format (linear, B-spline, or vector field). More...

Typedefs
typedef itk::TranslationTransform< double, 3 >	TranslationTransformType

typedef itk::VersorRigid3DTransform< double >	VersorTransformType

typedef itk::QuaternionRigidTransform< double >	QuaternionTransformType

typedef itk::AffineTransform< double, 3 >	AffineTransformType

typedef itk::Similarity3DTransform< double >	SimilarityTransformType

typedef itk::BSplineDeformableTransform< double, SplineDimension, SplineOrder >	BsplineTransformType

typedef itk::ThinPlateSplineKernelTransform< float, 3 >	FloatTpsTransformType

typedef itk::ThinPlateSplineKernelTransform< double, 3 >	DoubleTpsTransformType

typedef DoubleTpsTransformType	TpsTransformType

Enumerations
enum	Xform_type { XFORM_NONE , XFORM_ITK_TRANSLATION , XFORM_ITK_VERSOR , XFORM_ITK_QUATERNION , XFORM_ITK_SIMILARITY , XFORM_ITK_AFFINE , XFORM_ITK_BSPLINE , XFORM_ITK_TPS , XFORM_ITK_VECTOR_FIELD , XFORM_GPUIT_BSPLINE , XFORM_GPUIT_VECTOR_FIELD }

Functions
Xform::Pointer	xform_load (const std::string &fn)

Xform::Pointer	xform_load (const char *fn)

void	xform_load (Xform *xf, const std::string &fn)

void	xform_load (Xform xf, const char fn)

void	xform_save (Xform *xf, const std::string &fn)

void	xform_save (Xform xf, const char fn)

void	xform_itk_bsp_init_default (Xform *xf)

void	xform_itk_bsp_set_grid (Xform *xf, const BsplineTransformType::OriginType bsp_origin, const BsplineTransformType::SpacingType bsp_spacing, const BsplineTransformType::RegionType bsp_region, const BsplineTransformType::DirectionType bsp_direction)

void	xform_to_trn (Xform xf_out, const Xform xf_in, Plm_image_header *pih)

void	xform_to_vrs (Xform xf_out, const Xform xf_in, Plm_image_header *pih)

void	xform_to_quat (Xform xf_out, const Xform xf_in, Plm_image_header *pih)

void	xform_to_aff (Xform xf_out, const Xform xf_in, Plm_image_header *pih)

void	xform_to_similarity (Xform xf_out, const Xform xf_in, Plm_image_header *pih)

DeformationFieldType::Pointer	xform_gpuit_vf_to_itk_vf (Volume vf, const Plm_image_header pih)

void	xform_to_itk_bsp (Xform xf_out, const Xform xf_in, Plm_image_header pih, const float grid_spac)

void	xform_to_itk_bsp_nobulk (Xform xf_out, Xform xf_in, Plm_image_header pih, const float grid_spac)

void	xform_to_itk_vf (Xform xf_out, Xform xf_in, const Plm_image_header *pih)

void	xform_to_itk_vf (Xform xf_out, Xform xf_in, FloatImageType::Pointer image)

void	xform_to_gpuit_bsp (Xform xf_out, Xform xf_in, Plm_image_header pih, const float grid_spac)

void	xform_to_gpuit_vf (Xform xf_out, const Xform xf_in, const Plm_image_header *pih)

Xform::Pointer	xform_to_aff (const Xform::Pointer &xf_in)

Xform::Pointer	xform_to_itk_bsp (const Xform::Pointer &xf_in, Plm_image_header pih, const float grid_spac)

Xform::Pointer	xform_to_itk_bsp_nobulk (const Xform::Pointer &xf_in, Plm_image_header pih, const float grid_spac)

Xform::Pointer	xform_to_itk_vf (const Xform::Pointer &xf_in, Plm_image_header *pih)

Xform::Pointer	xform_to_gpuit_bsp (const Xform::Pointer &xf_in, Plm_image_header pih, float grid_spac)

Xform::Pointer	xform_to_gpuit_vf (const Xform::Pointer &xf_in, const Plm_image_header *pih)

Variables
const unsigned int	SplineDimension = 3

const unsigned int	SplineOrder = 3

Typedef Documentation

◆ AffineTransformType

typedef itk::AffineTransform< double, 3 > AffineTransformType

◆ BsplineTransformType

typedef itk::BSplineDeformableTransform< double, SplineDimension, SplineOrder > BsplineTransformType

◆ DoubleTpsTransformType

typedef itk::ThinPlateSplineKernelTransform< double, 3 > DoubleTpsTransformType

◆ FloatTpsTransformType

typedef itk::ThinPlateSplineKernelTransform< float, 3 > FloatTpsTransformType

◆ QuaternionTransformType

typedef itk::QuaternionRigidTransform< double > QuaternionTransformType

◆ SimilarityTransformType

typedef itk::Similarity3DTransform<double> SimilarityTransformType

◆ TpsTransformType

typedef DoubleTpsTransformType TpsTransformType

◆ TranslationTransformType

typedef itk::TranslationTransform< double, 3 > TranslationTransformType

◆ VersorTransformType

typedef itk::VersorRigid3DTransform< double > VersorTransformType

Enumeration Type Documentation

◆ Xform_type

enum Xform_type

Enumerator
XFORM_NONE
XFORM_ITK_TRANSLATION
XFORM_ITK_VERSOR
XFORM_ITK_QUATERNION
XFORM_ITK_SIMILARITY
XFORM_ITK_AFFINE
XFORM_ITK_BSPLINE
XFORM_ITK_TPS
XFORM_ITK_VECTOR_FIELD
XFORM_GPUIT_BSPLINE
XFORM_GPUIT_VECTOR_FIELD

Function Documentation

◆ xform_gpuit_vf_to_itk_vf()

DeformationFieldType::Pointer xform_gpuit_vf_to_itk_vf	(	Volume *	vf,
		const Plm_image_header *	pih )

◆ xform_itk_bsp_init_default()

void xform_itk_bsp_init_default ( Xform * xf )

◆ xform_itk_bsp_set_grid()

void xform_itk_bsp_set_grid	(	Xform *	xf,
		const BsplineTransformType::OriginType	bsp_origin,
		const BsplineTransformType::SpacingType	bsp_spacing,
		const BsplineTransformType::RegionType	bsp_region,
		const BsplineTransformType::DirectionType	bsp_direction )

◆ xform_load() [1/4]

Xform::Pointer xform_load ( const char * fn )

◆ xform_load() [2/4]

Xform::Pointer xform_load ( const std::string & fn )

◆ xform_load() [3/4]

void xform_load	(	Xform *	xf,
		const char *	fn )

◆ xform_load() [4/4]

void xform_load	(	Xform *	xf,
		const std::string &	fn )

◆ xform_save() [1/2]

void xform_save	(	Xform *	xf,
		const char *	fn )

◆ xform_save() [2/2]

void xform_save	(	Xform *	xf,
		const std::string &	fn )

◆ xform_to_aff() [1/2]

Xform::Pointer xform_to_aff ( const Xform::Pointer & xf_in )

◆ xform_to_aff() [2/2]

void xform_to_aff	(	Xform *	xf_out,
		const Xform *	xf_in,
		Plm_image_header *	pih )

◆ xform_to_gpuit_bsp() [1/2]

Xform::Pointer xform_to_gpuit_bsp	(	const Xform::Pointer &	xf_in,
		Plm_image_header *	pih,
		float *	grid_spac )

◆ xform_to_gpuit_bsp() [2/2]

void xform_to_gpuit_bsp	(	Xform *	xf_out,
		Xform *	xf_in,
		Plm_image_header *	pih,
		const float *	grid_spac )

◆ xform_to_gpuit_vf() [1/2]

Xform::Pointer xform_to_gpuit_vf	(	const Xform::Pointer &	xf_in,
		const Plm_image_header *	pih )

◆ xform_to_gpuit_vf() [2/2]

void xform_to_gpuit_vf	(	Xform *	xf_out,
		const Xform *	xf_in,
		const Plm_image_header *	pih )

◆ xform_to_itk_bsp() [1/2]

Xform::Pointer xform_to_itk_bsp	(	const Xform::Pointer &	xf_in,
		Plm_image_header *	pih,
		const float *	grid_spac )

◆ xform_to_itk_bsp() [2/2]

void xform_to_itk_bsp	(	Xform *	xf_out,
		const Xform *	xf_in,
		Plm_image_header *	pih,
		const float *	grid_spac )

◆ xform_to_itk_bsp_nobulk() [1/2]

Xform::Pointer xform_to_itk_bsp_nobulk	(	const Xform::Pointer &	xf_in,
		Plm_image_header *	pih,
		const float *	grid_spac )

◆ xform_to_itk_bsp_nobulk() [2/2]

void xform_to_itk_bsp_nobulk	(	Xform *	xf_out,
		Xform *	xf_in,
		Plm_image_header *	pih,
		const float *	grid_spac )

◆ xform_to_itk_vf() [1/3]

Xform::Pointer xform_to_itk_vf	(	const Xform::Pointer &	xf_in,
		Plm_image_header *	pih )

◆ xform_to_itk_vf() [2/3]

void xform_to_itk_vf	(	Xform *	xf_out,
		Xform *	xf_in,
		const Plm_image_header *	pih )

◆ xform_to_itk_vf() [3/3]

void xform_to_itk_vf	(	Xform *	xf_out,
		Xform *	xf_in,
		FloatImageType::Pointer	image )

◆ xform_to_quat()

void xform_to_quat	(	Xform *	xf_out,
		const Xform *	xf_in,
		Plm_image_header *	pih )

◆ xform_to_similarity()

void xform_to_similarity	(	Xform *	xf_out,
		const Xform *	xf_in,
		Plm_image_header *	pih )

◆ xform_to_trn()

void xform_to_trn	(	Xform *	xf_out,
		const Xform *	xf_in,
		Plm_image_header *	pih )

◆ xform_to_vrs()

void xform_to_vrs	(	Xform *	xf_out,
		const Xform *	xf_in,
		Plm_image_header *	pih )

Classes

Typedefs

Enumerations

Functions

Variables